Variant report

Variant	rs2643581
Chromosome Location	chrX:77395900-77395901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:77393670-77396691	A549	lung:	n/a	n/a
2	POLR2A	chrX:77390815-77396400	U87	brain:	n/a	n/a
3	POLR2A	chrX:77393625-77399104	HepG2	liver:	n/a	n/a
4	POLR2A	chrX:77382926-77396574	U87	brain:	n/a	n/a
5	POLR2A	chrX:77395854-77396069	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chrX:77394614-77396325	GM12878	blood:	n/a	n/a
7	POLR2A	chrX:77379537-77396766	U87	brain:	n/a	n/a
8	FOSL2	chrX:77393424-77396181	HepG2	liver:	n/a	chrX:77394560-77394568 chrX:77395188-77395197 chrX:77394559-77394569 chrX:77394559-77394569
9	POLR2A	chrX:77390776-77396400	U87	brain:	n/a	n/a
10	HCFC1	chrX:77394636-77396295	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chrX:77390921-77396652	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chrX:77394779-77397478	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chrX:77390885-77396517	GM12878	blood:	n/a	n/a
14	POLR2A	chrX:77394756-77396500	HepG2	liver:	n/a	n/a
15	POLR2A	chrX:77394355-77396571	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TAF9B	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10991	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs167674	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17139585	0.90[ASW][hapmap];0.80[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap]
rs2073176	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs2073178	0.90[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2227291	0.82[TSI][hapmap]
rs320988	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs320990	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs320992	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs320995	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap]
rs320996	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs320999	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap]
rs321005	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs321028	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs321029	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs321073	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs321074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs321085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321088	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs321090	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs321091	0.86[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs321094	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321095	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs428207	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4826248	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77394000-77396000	Active TSS	HepG2	liver
2	chrX:77395400-77396000	Flanking Active TSS	Dnd41	blood
3	chrX:77395600-77396000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chrX:77395600-77396000	Enhancers	Primary T cells fromperipheralblood	blood
5	chrX:77395600-77398600	Weak transcription	Fetal Kidney	kidney
6	chrX:77395800-77396000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chrX:77395800-77396000	Enhancers	Brain Anterior Caudate	brain
8	chrX:77395800-77396000	Active TSS	Hela-S3	cervix
9	chrX:77395800-77396000	Enhancers	K562	blood

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