Variant report

Variant	rs428207
Chromosome Location	chrX:77577613-77577614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10991	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs167674	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2073176	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2073178	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2643581	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320988	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320990	0.93[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs320992	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320995	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs320996	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321073	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321074	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321085	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs321086	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs321088	0.86[CEU][hapmap];0.94[JPT][hapmap]
rs321090	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs321091	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs321094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs379704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77572600-77578400	Weak transcription	Adipose Nuclei	Adipose
2	chrX:77576400-77578000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chrX:77576400-77579400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chrX:77576400-77579400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chrX:77576400-77579600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chrX:77576400-77580200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chrX:77576400-77580600	Enhancers	Primary hematopoietic stem cells	blood
8	chrX:77576400-77580600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chrX:77576400-77581000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chrX:77576600-77578400	Enhancers	Primary T cells fromperipheralblood	blood
11	chrX:77576600-77579000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chrX:77576800-77578200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chrX:77576800-77578800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chrX:77576800-77578800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chrX:77576800-77578800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chrX:77577000-77578200	Enhancers	Primary B cells from peripheral blood	blood
17	chrX:77577000-77580200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chrX:77577200-77578400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chrX:77577200-77578600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chrX:77577200-77579400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chrX:77577400-77579400	Enhancers	Dnd41	blood
22	chrX:77577400-77580600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chrX:77577600-77577800	Flanking Active TSS	GM12878-XiMat	blood
24	chrX:77577600-77578000	Active TSS	Primary T cells from cord blood	blood
25	chrX:77577600-77578000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chrX:77577600-77579200	Flanking Active TSS	Primary B cells from cord blood	blood
27	chrX:77577600-77579800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chrX:77577600-77584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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