Variant report

Variant	rs321028
Chromosome Location	chrX:77587600-77587601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chrX:77587228-77587700	HL-60	blood:	n/a	chrX:77587385-77587398 chrX:77587387-77587396
2	SPI1	chrX:77587241-77587603	GM12891	blood:	n/a	chrX:77587385-77587398 chrX:77587387-77587396
3	RUNX3	chrX:77587207-77587611	GM12878	blood:	n/a	n/a
4	RUNX3	chrX:77587247-77587616	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
CYSLTR1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs167674	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs2643581	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs320988	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs320990	0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.86[TSI][hapmap]
rs320992	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs320995	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap]
rs320996	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs320999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs321005	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap]
rs321029	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap]
rs321073	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs321074	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap]
rs321085	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321086	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321088	0.86[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs321090	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap]
rs321091	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs379704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs428207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826053	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77583200-77591000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:77583400-77590800	Enhancers	Primary B cells from peripheral blood	blood
3	chrX:77583400-77590800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chrX:77583400-77591200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chrX:77583600-77588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chrX:77584600-77588200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:77585000-77588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chrX:77585400-77587600	Weak transcription	Primary hematopoietic stem cells	blood
9	chrX:77585400-77588600	Weak transcription	Dnd41	blood
10	chrX:77585600-77588800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chrX:77585600-77591400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chrX:77585800-77589000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chrX:77585800-77591800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chrX:77586200-77587600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chrX:77586200-77588000	Enhancers	GM12878-XiMat	blood
16	chrX:77586400-77588200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chrX:77586600-77588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chrX:77587000-77587800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chrX:77587000-77588200	Enhancers	Primary T cells fromperipheralblood	blood
20	chrX:77587000-77588600	Weak transcription	Primary T cells from cord blood	blood
21	chrX:77587400-77587600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chrX:77587400-77587600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chrX:77587400-77587800	Enhancers	Primary B cells from cord blood	blood
24	chrX:77587400-77588000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chrX:77587600-77588000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chrX:77587600-77588200	Enhancers	Primary hematopoietic stem cells	blood
27	chrX:77587600-77591400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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