Variant report

Variant	rs321029
Chromosome Location	chrX:77583746-77583747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10991	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs167674	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs2643581	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs320988	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs320990	0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap]
rs320992	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs320995	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap]
rs320996	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs320999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs321005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs321028	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap]
rs321073	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs321074	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap]
rs321085	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321086	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321088	0.86[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs321090	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs321091	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs321094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs379704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs428207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826053	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77577600-77584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:77579000-77584600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chrX:77582800-77583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chrX:77582800-77583800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chrX:77583000-77584000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chrX:77583000-77584600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chrX:77583200-77583800	Enhancers	Fetal Thymus	thymus
8	chrX:77583200-77584800	Weak transcription	Right Atrium	heart
9	chrX:77583200-77591000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chrX:77583400-77583800	Enhancers	Primary B cells from cord blood	blood
11	chrX:77583400-77583800	Enhancers	Primary T cells fromperipheralblood	blood
12	chrX:77583400-77583800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chrX:77583400-77583800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chrX:77583400-77583800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chrX:77583400-77583800	Enhancers	Fetal Muscle Leg	muscle
16	chrX:77583400-77584000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chrX:77583400-77584000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chrX:77583400-77584000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chrX:77583400-77584200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chrX:77583400-77584600	Weak transcription	Dnd41	blood
21	chrX:77583400-77584800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chrX:77583400-77585200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chrX:77583400-77585400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chrX:77583400-77590800	Enhancers	Primary B cells from peripheral blood	blood
25	chrX:77583400-77590800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chrX:77583400-77591200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chrX:77583600-77583800	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chrX:77583600-77583800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chrX:77583600-77583800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chrX:77583600-77585200	Enhancers	GM12878-XiMat	blood
31	chrX:77583600-77587000	Enhancers	Primary T cells from cord blood	blood
32	chrX:77583600-77588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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