Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:77393428..77395689-chrX:77631274..77633884,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187325	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs167674	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320988	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320990	0.93[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs320992	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320995	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs320996	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs320999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs321029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321073	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321074	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs321085	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs321086	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs321088	0.86[CEU][hapmap];0.94[JPT][hapmap]
rs321090	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321091	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs321094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs321095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs428207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826053	0.88[JPT][hapmap]
rs767400	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv492122	chrX:77450503-77664330	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77630600-77632800	Enhancers	Dnd41	blood
2	chrX:77630800-77631800	Enhancers	NHEK	skin
3	chrX:77630800-77632800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chrX:77631600-77633800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chrX:77631600-77634400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chrX:77631600-77635000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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