Variant report

Variant	rs2643937
Chromosome Location	chr12:26205933-26205934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1069974	0.87[ASN][1000 genomes]
rs10732539	0.87[ASN][1000 genomes]
rs10842649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10842657	0.87[ASN][1000 genomes]
rs11048399	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1167537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1513125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513126	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs1826754	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1979748	1.00[ASN][1000 genomes]
rs1994996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2055181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2634179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2643938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2669555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2729651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2729661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3803007	0.87[ASN][1000 genomes]
rs56306595	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706522	0.87[ASN][1000 genomes]
rs706525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7310826	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7980111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs829986	0.87[ASN][1000 genomes]
rs863807	0.87[ASN][1000 genomes]
rs864920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs924050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs924051	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
4	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:26197200-26206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:26197200-26209400	Weak transcription	NHLF	lung
7	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
9	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
12	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr12:26200600-26209200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:26200800-26206400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:26200800-26207400	Weak transcription	Pancreas	Pancrea
16	chr12:26200800-26208800	Weak transcription	Lung	lung
17	chr12:26200800-26209200	Weak transcription	Fetal Brain Male	brain
18	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr12:26201000-26206400	Weak transcription	Ovary	ovary
20	chr12:26201000-26206600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:26201000-26207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
23	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:26201200-26206600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:26201200-26206600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:26201200-26210800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr12:26201400-26206400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:26201400-26206400	Weak transcription	Fetal Heart	heart
30	chr12:26201400-26206600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr12:26201400-26206600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:26201400-26209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:26201600-26206600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:26201600-26206600	Weak transcription	Right Atrium	heart
36	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
37	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
38	chr12:26202000-26211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:26202200-26206200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:26204600-26211200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:26204800-26206800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:26204800-26207600	Enhancers	NHDF-Ad	bronchial
43	chr12:26205000-26206200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr12:26205200-26207800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:26205400-26206000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:26205400-26206000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr12:26205400-26206000	Enhancers	Stomach Mucosa	stomach
48	chr12:26205400-26206000	Enhancers	NH-A	brain
49	chr12:26205400-26206800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr12:26205400-26207000	Enhancers	Duodenum Smooth Muscle	Duodenum

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