Variant report

Variant	rs7980111
Chromosome Location	chr12:26195629-26195630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1069974	0.87[ASN][1000 genomes]
rs10732539	0.87[ASN][1000 genomes]
rs10842649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10842657	0.87[ASN][1000 genomes]
rs11048399	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1167537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1513125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513126	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1826754	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1979748	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1994996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2055181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2634179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2643937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2643938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2669555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2729651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2729661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3803007	0.87[ASN][1000 genomes]
rs56306595	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706522	0.87[ASN][1000 genomes]
rs706525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7310826	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs829983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs829986	0.87[ASN][1000 genomes]
rs863807	0.87[ASN][1000 genomes]
rs864920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs924050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs924051	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
3	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:26191000-26196000	Weak transcription	Ovary	ovary
7	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
11	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
16	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
19	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain
20	chr12:26193600-26196000	Weak transcription	Lung	lung
21	chr12:26193600-26196200	Weak transcription	Right Atrium	heart
22	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
23	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:26194600-26196400	Enhancers	Osteobl	bone
25	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
27	chr12:26194800-26196400	Enhancers	Hela-S3	cervix
28	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:26194800-26196600	Enhancers	NHLF	lung
30	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:26194800-26198600	Enhancers	NH-A	brain
32	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr12:26195000-26196000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr12:26195000-26196000	Enhancers	Brain Anterior Caudate	brain
35	chr12:26195000-26196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
39	chr12:26195000-26197000	Enhancers	A549	lung
40	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr12:26195200-26195800	Enhancers	Brain Hippocampus Middle	brain
48	chr12:26195200-26195800	Weak transcription	Fetal Stomach	stomach
49	chr12:26195200-26196400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr12:26195200-26196400	Enhancers	Brain Germinal Matrix	brain

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