Variant report

Variant	rs2729651
Chromosome Location	chr12:26196426-26196427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1069974	0.87[ASN][1000 genomes]
rs10732539	0.87[ASN][1000 genomes]
rs10842649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10842657	0.87[ASN][1000 genomes]
rs11048399	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1167537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1390325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1495661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1513125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513126	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1826754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1979748	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1994996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2055181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2634179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2643937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2643938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2669555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2729661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2729662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3803007	0.87[ASN][1000 genomes]
rs56306595	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706522	0.87[ASN][1000 genomes]
rs706525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs706528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7310826	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7980111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs829986	0.87[ASN][1000 genomes]
rs863807	0.87[ASN][1000 genomes]
rs864920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs924050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs924051	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
8	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:26194800-26196600	Enhancers	NHLF	lung
10	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:26194800-26198600	Enhancers	NH-A	brain
12	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
16	chr12:26195000-26197000	Enhancers	A549	lung
17	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr12:26195200-26197200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr12:26195200-26197600	Enhancers	Fetal Lung	lung
26	chr12:26195200-26197800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
28	chr12:26195400-26196800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr12:26195600-26197200	Enhancers	Rectal Smooth Muscle	rectum
30	chr12:26195600-26198400	Weak transcription	HSMM	muscle
31	chr12:26195600-26198600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
33	chr12:26195800-26196600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr12:26195800-26196800	Enhancers	H9 Cell Line	embryonic stem cell
35	chr12:26195800-26196800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:26195800-26196800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:26195800-26196800	Enhancers	NHEK	skin
38	chr12:26195800-26197200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:26195800-26197200	Enhancers	Aorta	Aorta
40	chr12:26195800-26197200	Enhancers	Fetal Brain Female	brain
41	chr12:26195800-26197200	Enhancers	Fetal Stomach	stomach
42	chr12:26195800-26197200	Enhancers	Psoas Muscle	Psoas
43	chr12:26195800-26197200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr12:26195800-26197200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr12:26196000-26196600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr12:26196000-26196600	Enhancers	Lung	lung
47	chr12:26196000-26196800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:26196000-26197200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr12:26196000-26197200	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr12:26196000-26197200	Flanking Active TSS	Brain Hippocampus Middle	brain

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