Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10082833	0.81[EUR][1000 genomes]
rs10877452	0.80[EUR][1000 genomes]
rs11173581	0.86[EUR][1000 genomes]
rs11173625	0.81[EUR][1000 genomes]
rs11173627	0.82[EUR][1000 genomes]
rs12298398	0.85[EUR][1000 genomes]
rs12301122	0.81[EUR][1000 genomes]
rs12321112	0.90[EUR][1000 genomes]
rs1353732	0.87[EUR][1000 genomes]
rs1587345	0.82[EUR][1000 genomes]
rs1604715	0.88[EUR][1000 genomes]
rs273780	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs273781	0.86[EUR][1000 genomes]
rs273782	0.88[EUR][1000 genomes]
rs273785	0.88[EUR][1000 genomes]
rs273787	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4758883	0.84[EUR][1000 genomes]
rs7134059	0.81[EUR][1000 genomes]
rs7301607	0.82[EUR][1000 genomes]
rs9669114	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051641	chr12:60986661-61161174	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv541508	chr12:60986661-61161174	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1049626	chr12:61005224-61095254	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1035259	chr12:61008196-61095254	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:61041000-61041200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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