Variant report
| Variant | rs273780 |
|---|---|
| Chromosome Location | chr12:61068467-61068468 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10082833 | 0.83[EUR][1000 genomes] |
| rs1032642 | 0.81[EUR][1000 genomes] |
| rs1032643 | 0.80[EUR][1000 genomes] |
| rs1032644 | 0.81[EUR][1000 genomes] |
| rs10784067 | 0.85[EUR][1000 genomes] |
| rs10784068 | 0.85[EUR][1000 genomes] |
| rs10877452 | 0.81[EUR][1000 genomes] |
| rs10877453 | 0.80[EUR][1000 genomes] |
| rs11173581 | 0.89[EUR][1000 genomes] |
| rs11173622 | 0.82[EUR][1000 genomes] |
| rs11173625 | 0.82[EUR][1000 genomes] |
| rs11173627 | 0.82[EUR][1000 genomes] |
| rs11173628 | 0.82[EUR][1000 genomes] |
| rs11173630 | 0.82[EUR][1000 genomes] |
| rs11173634 | 0.82[EUR][1000 genomes] |
| rs12296661 | 0.81[EUR][1000 genomes] |
| rs12298398 | 0.86[EUR][1000 genomes] |
| rs12301122 | 0.83[EUR][1000 genomes] |
| rs12320516 | 0.87[EUR][1000 genomes] |
| rs12321112 | 0.90[EUR][1000 genomes] |
| rs1353732 | 0.88[EUR][1000 genomes] |
| rs1587345 | 0.82[EUR][1000 genomes] |
| rs1604715 | 0.90[EUR][1000 genomes] |
| rs2654655 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs273781 | 0.88[EUR][1000 genomes] |
| rs273782 | 0.90[EUR][1000 genomes] |
| rs273785 | 0.90[EUR][1000 genomes] |
| rs273787 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4758883 | 0.85[EUR][1000 genomes] |
| rs6581347 | 0.80[EUR][1000 genomes] |
| rs7134059 | 0.83[EUR][1000 genomes] |
| rs7301607 | 0.82[EUR][1000 genomes] |
| rs73382964 | 0.82[EUR][1000 genomes] |
| rs7485220 | 0.80[EUR][1000 genomes] |
| rs7486370 | 0.84[EUR][1000 genomes] |
| rs7487354 | 0.80[EUR][1000 genomes] |
| rs7953872 | 0.80[EUR][1000 genomes] |
| rs9669114 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051641 | chr12:60986661-61161174 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv541508 | chr12:60986661-61161174 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1049626 | chr12:61005224-61095254 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1035259 | chr12:61008196-61095254 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv899139 | chr12:61043705-61316609 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv559144 | chr12:61054803-61214545 | Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:61067200-61068600 | Weak transcription | Brain Germinal Matrix | brain |
