Variant report

Variant	rs273785
Chromosome Location	chr12:61065809-61065810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10082833	0.91[EUR][1000 genomes]
rs1032641	0.86[EUR][1000 genomes]
rs1032642	0.88[EUR][1000 genomes]
rs1032643	0.87[EUR][1000 genomes]
rs1032644	0.88[EUR][1000 genomes]
rs10784067	0.83[EUR][1000 genomes]
rs10784068	0.83[EUR][1000 genomes]
rs10877452	0.88[EUR][1000 genomes]
rs10877453	0.87[EUR][1000 genomes]
rs10877458	0.86[EUR][1000 genomes]
rs11173581	0.97[EUR][1000 genomes]
rs11173622	0.89[EUR][1000 genomes]
rs11173625	0.89[EUR][1000 genomes]
rs11173627	0.82[EUR][1000 genomes]
rs11173628	0.89[EUR][1000 genomes]
rs11173630	0.89[EUR][1000 genomes]
rs11173634	0.89[EUR][1000 genomes]
rs12296489	0.84[EUR][1000 genomes]
rs12296661	0.88[EUR][1000 genomes]
rs12298398	0.85[EUR][1000 genomes]
rs12301122	0.91[EUR][1000 genomes]
rs12320516	0.85[EUR][1000 genomes]
rs12321112	0.88[EUR][1000 genomes]
rs1353732	0.86[EUR][1000 genomes]
rs1587345	0.90[EUR][1000 genomes]
rs1604715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2654655	0.88[EUR][1000 genomes]
rs273780	0.90[EUR][1000 genomes]
rs273781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs273782	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273787	0.90[EUR][1000 genomes]
rs4758883	0.83[EUR][1000 genomes]
rs61040712	0.85[EUR][1000 genomes]
rs6581347	0.87[EUR][1000 genomes]
rs6581348	0.86[EUR][1000 genomes]
rs7134059	0.91[EUR][1000 genomes]
rs7301607	0.90[EUR][1000 genomes]
rs73382964	0.89[EUR][1000 genomes]
rs7485220	0.87[EUR][1000 genomes]
rs7486370	0.82[EUR][1000 genomes]
rs7487354	0.87[EUR][1000 genomes]
rs7488790	0.86[EUR][1000 genomes]
rs7953872	0.87[EUR][1000 genomes]
rs9669114	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051641	chr12:60986661-61161174	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv541508	chr12:60986661-61161174	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1049626	chr12:61005224-61095254	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1035259	chr12:61008196-61095254	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv899139	chr12:61043705-61316609	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv559144	chr12:61054803-61214545	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:61065800-61066000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links