Variant report

Variant	rs2685594
Chromosome Location	chr8:34663996-34663997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10093005	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988462	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11995347	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12114068	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1317084	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254921	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13262347	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13263701	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13264659	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403375	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403377	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1522844	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1522849	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1522850	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16915	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807927	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916170	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916172	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916173	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916175	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916176	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1949719	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1949720	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1949721	0.92[ASN][1000 genomes]
rs2254811	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254888	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256710	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257117	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685590	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685591	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685593	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685595	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685596	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685599	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685600	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685602	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685603	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685604	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685605	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685607	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685609	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2685610	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687543	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687544	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687545	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687546	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687548	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687549	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687554	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2687556	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2687557	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28538456	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35383581	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468286	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468288	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6468289	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6994824	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7007425	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7837802	0.80[ASN][1000 genomes]
rs7843303	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845916	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs952902	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890715	chr8:34568015-34700530	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv465635	chr8:34631970-34710118	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv610932	chr8:34631970-34710118	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv465636	chr8:34649550-34710118	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv610933	chr8:34649550-34710118	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv517906	chr8:34661096-34669532	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34663200-34673000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links