Variant report

Variant	rs2691074
Chromosome Location	chr3:81874032-81874033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2316138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594550	1.00[YRI][hapmap]
rs2594554	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594563	1.00[YRI][hapmap]
rs2680241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680243	1.00[YRI][hapmap]
rs2680244	1.00[YRI][hapmap]
rs2680248	1.00[YRI][hapmap]
rs2680250	1.00[YRI][hapmap]
rs2680252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680266	1.00[YRI][hapmap]
rs2680269	1.00[YRI][hapmap]
rs2680270	1.00[YRI][hapmap]
rs2680279	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81871000-81874400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:81872400-81874400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:81872800-81874200	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:81873000-81874400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:81873200-81874200	Enhancers	Dnd41	blood
6	chr3:81873800-81874200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr3:81873800-81874400	Active TSS	Liver	Liver
8	chr3:81873800-81874400	Enhancers	GM12878-XiMat	blood
9	chr3:81874000-81874200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:81874000-81874400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:81874000-81874600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:81874000-81874800	Active TSS	Primary B cells from cord blood	blood
13	chr3:81874000-81879000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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