Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11236316	0.81[ASN][1000 genomes]
rs11236317	0.81[ASN][1000 genomes]
rs11236322	0.81[ASN][1000 genomes]
rs11236323	0.80[ASN][1000 genomes]
rs11236325	0.80[ASN][1000 genomes]
rs1893839	0.80[ASN][1000 genomes]
rs2712781	0.83[ASN][1000 genomes]
rs2712787	0.82[ASN][1000 genomes]
rs2712789	0.82[ASN][1000 genomes]
rs2712796	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851085	0.82[ASN][1000 genomes]
rs2851094	0.86[ASN][1000 genomes]
rs2851096	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3017932	0.82[ASN][1000 genomes]
rs3018832	0.80[ASN][1000 genomes]
rs34806493	0.81[ASN][1000 genomes]
rs7112183	0.80[ASN][1000 genomes]
rs7122948	0.80[ASN][1000 genomes]
rs753171	0.87[ASN][1000 genomes]
rs949072	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2712792	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74842000-74851400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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