Variant report

Variant	rs2851096
Chromosome Location	chr11:74842617-74842618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10899068	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11236316	0.91[ASN][1000 genomes]
rs11236317	0.91[ASN][1000 genomes]
rs11236322	0.91[ASN][1000 genomes]
rs11236323	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236325	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236359	0.90[CEU][hapmap]
rs1893839	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2187435	0.94[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2712781	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712787	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712789	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712790	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2712792	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2712796	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2712805	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2712807	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2712810	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2712819	0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2712821	0.86[EUR][1000 genomes]
rs2851064	0.95[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2851066	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851073	0.86[EUR][1000 genomes]
rs2851074	0.89[CEU][hapmap]
rs2851085	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851094	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851102	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851108	0.81[ASN][1000 genomes]
rs3017932	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3018832	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34806493	0.91[ASN][1000 genomes]
rs4146884	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7112183	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7122948	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753171	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949072	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634028	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2851096	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74842000-74851400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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