Variant report

Variant	rs753171
Chromosome Location	chr11:74845723-74845724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74811461..74813026-chr11:74844790..74846462,2	K562	blood:
2	chr11:74844001..74846450-chr11:74934695..74936600,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10899068	0.90[ASN][1000 genomes]
rs11236316	0.91[ASN][1000 genomes]
rs11236317	0.91[ASN][1000 genomes]
rs11236322	0.91[ASN][1000 genomes]
rs11236323	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236325	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1893839	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2187435	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712781	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712787	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712789	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712790	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2712792	0.87[ASN][1000 genomes]
rs2712796	0.87[ASN][1000 genomes]
rs2712805	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712807	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712810	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2712819	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2712821	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2851064	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851066	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851073	0.84[EUR][1000 genomes]
rs2851085	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851094	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851096	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851102	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851108	0.81[ASN][1000 genomes]
rs3017932	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3018832	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34806493	0.91[ASN][1000 genomes]
rs4146884	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7112183	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7122948	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs949072	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634028	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs753171	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74842000-74851400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74844600-74846600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:74844800-74846400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:74844800-74846400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:74845000-74846600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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