Variant report

Variant	rs2851066
Chromosome Location	chr11:74860592-74860593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74860426..74862138-chr11:74866873..74869626,2	K562	blood:
2	chr11:74860499..74862617-chr11:74862814..74864502,2	K562	blood:
3	chr11:74853654..74855652-chr11:74858777..74860606,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11236316	0.80[ASN][1000 genomes]
rs11236317	0.80[ASN][1000 genomes]
rs11236322	0.80[ASN][1000 genomes]
rs11236359	0.85[ASN][1000 genomes]
rs2187435	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712781	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2712805	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2712807	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2712810	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2712819	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2712820	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2712821	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851064	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851073	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851074	0.86[ASN][1000 genomes]
rs2851094	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2851096	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851102	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2851110	0.82[ASN][1000 genomes]
rs34806493	0.80[ASN][1000 genomes]
rs753171	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2851066	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
3	chr11:74853800-74862000	Enhancers	HepG2	liver
4	chr11:74853800-74862200	Enhancers	Placenta	Placenta
5	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
6	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
7	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
11	chr11:74858200-74861400	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:74859000-74861400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
14	chr11:74859000-74862400	Weak transcription	Liver	Liver
15	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:74859200-74861800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
18	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:74859600-74860600	Weak transcription	Colonic Mucosa	Colon
22	chr11:74859800-74862200	Weak transcription	Lung	lung
23	chr11:74860000-74861000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:74860000-74861000	Weak transcription	Esophagus	oesophagus
25	chr11:74860000-74861200	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:74860000-74861200	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:74860000-74861200	Weak transcription	Fetal Thymus	thymus
28	chr11:74860000-74861200	Weak transcription	Pancreas	Pancrea
29	chr11:74860000-74861400	Weak transcription	Adipose Nuclei	Adipose
30	chr11:74860000-74861400	Weak transcription	Fetal Stomach	stomach
31	chr11:74860000-74864000	Weak transcription	Spleen	Spleen
32	chr11:74860200-74860600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:74860200-74860600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:74860400-74862000	Enhancers	Sigmoid Colon	Sigmoid Colon

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