Variant report

Variant	rs11236359
Chromosome Location	chr11:74870884-74870885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11236323	0.85[CEU][hapmap]
rs11236325	0.82[CEU][hapmap]
rs1676877	0.83[EUR][1000 genomes]
rs1676879	0.84[EUR][1000 genomes]
rs1789694	0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2187435	0.95[CEU][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2712787	0.89[CEU][hapmap]
rs2712789	0.85[CEU][hapmap]
rs2712805	0.95[CEU][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2712807	0.87[ASN][1000 genomes]
rs2712810	0.95[ASN][1000 genomes]
rs2712819	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2712820	0.87[ASN][1000 genomes]
rs2712821	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851064	0.95[CEU][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2851066	0.85[ASN][1000 genomes]
rs2851073	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851074	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851085	0.85[CEU][hapmap];0.81[CHD][hapmap]
rs2851110	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4146884	0.85[CEU][hapmap]
rs7122948	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs11236359	UCP2	cis	parietal	SCAN
rs11236359	INPPL1	cis	parietal	SCAN
rs11236359	XRRA1	cis	parietal	SCAN
rs11236359	ATG16L2	cis	parietal	SCAN
rs11236359	PHOX2A	cis	parietal	SCAN
rs11236359	XRRA1	cis	cerebellum	SCAN
rs11236359	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs11236359	P2RY2	cis	parietal	SCAN
rs11236359	XRRA1	cis	lymphoblastoid	seeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74865000-74872000	Enhancers	Placenta	Placenta
4	chr11:74866200-74873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:74866400-74871000	Weak transcription	Spleen	Spleen
6	chr11:74866400-74873000	Weak transcription	Fetal Thymus	thymus
7	chr11:74867400-74873200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:74867600-74875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:74868600-74875200	Weak transcription	Ovary	ovary
10	chr11:74869600-74871000	Enhancers	Stomach Mucosa	stomach
11	chr11:74869600-74871200	Genic enhancers	Lung	lung
12	chr11:74869600-74871400	Enhancers	Brain Anterior Caudate	brain
13	chr11:74869800-74871200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:74869800-74871200	Enhancers	Brain Hippocampus Middle	brain
15	chr11:74869800-74871600	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:74869800-74871800	Enhancers	Gastric	stomach
17	chr11:74869800-74871800	Enhancers	Pancreas	Pancrea
18	chr11:74869800-74872200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:74870000-74871600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:74870000-74872800	Flanking Active TSS	Liver	Liver
21	chr11:74870000-74881000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:74870200-74871400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr11:74870200-74871600	Flanking Active TSS	Colonic Mucosa	Colon
24	chr11:74870200-74871600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr11:74870200-74871600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:74870200-74873400	Enhancers	Adipose Nuclei	Adipose
27	chr11:74870400-74871000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:74870400-74871200	Enhancers	Left Ventricle	heart
29	chr11:74870400-74871600	Enhancers	Fetal Muscle Leg	muscle
30	chr11:74870400-74871600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:74870400-74871600	Enhancers	Right Ventricle	heart
32	chr11:74870400-74871600	Flanking Active TSS	HepG2	liver
33	chr11:74870400-74872000	Enhancers	Right Atrium	heart
34	chr11:74870400-74872600	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr11:74870400-74875000	Weak transcription	Small Intestine	intestine
36	chr11:74870600-74871200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:74870600-74872000	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr11:74870800-74871000	Enhancers	Stomach Smooth Muscle	stomach
39	chr11:74870800-74871200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:74870800-74871200	Enhancers	A549	lung
41	chr11:74870800-74871400	Enhancers	Brain Substantia Nigra	brain
42	chr11:74870800-74871600	Enhancers	Fetal Stomach	stomach
43	chr11:74870800-74872200	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum

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