Variant report

Variant	rs2851064
Chromosome Location	chr11:74860061-74860062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74853654..74855652-chr11:74858777..74860606,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10899068	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11236316	0.82[ASN][1000 genomes]
rs11236317	0.82[ASN][1000 genomes]
rs11236322	0.82[ASN][1000 genomes]
rs11236323	0.90[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.82[ASN][1000 genomes]
rs11236325	0.87[CEU][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11236359	0.95[CEU][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1893839	0.82[ASN][1000 genomes]
rs2187435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712781	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2712787	0.94[CEU][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2712789	0.90[CEU][hapmap];0.80[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs2712796	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2712805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712819	0.92[ASW][hapmap];0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712820	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2712821	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851066	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851073	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851074	0.95[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs2851085	0.90[CEU][hapmap];0.80[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs2851094	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851096	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2851102	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851110	0.84[ASN][1000 genomes]
rs3017932	0.81[ASN][1000 genomes]
rs3018832	0.82[ASN][1000 genomes]
rs34806493	0.82[ASN][1000 genomes]
rs4146884	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs7112183	0.82[ASN][1000 genomes]
rs7122948	0.90[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.82[ASN][1000 genomes]
rs753171	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949072	0.81[ASN][1000 genomes]
rs9634028	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2851064	PHOX2A	cis	parietal	SCAN
rs2851064	P2RY2	cis	parietal	SCAN
rs2851064	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs2851064	UCP2	cis	parietal	SCAN
rs2851064	RNF169	cis	cerebellum	SCAN
rs2851064	INPPL1	cis	parietal	SCAN
rs2851064	RNF169	cis	parietal	SCAN
rs2851064	XRRA1	cis	cerebellum	SCAN
rs2851064	XRRA1	cis	lymphoblastoid	seeQTL
rs2851064	XRRA1	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
3	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:74853800-74862000	Enhancers	HepG2	liver
5	chr11:74853800-74862200	Enhancers	Placenta	Placenta
6	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
7	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
8	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:74856200-74860200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
13	chr11:74858200-74861400	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:74858600-74860400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:74859000-74861400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
17	chr11:74859000-74862400	Weak transcription	Liver	Liver
18	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:74859200-74861800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
21	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr11:74859600-74860600	Weak transcription	Colonic Mucosa	Colon
25	chr11:74859800-74862200	Weak transcription	Lung	lung
26	chr11:74860000-74861000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:74860000-74861000	Weak transcription	Esophagus	oesophagus
28	chr11:74860000-74861200	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:74860000-74861200	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:74860000-74861200	Weak transcription	Fetal Thymus	thymus
31	chr11:74860000-74861200	Weak transcription	Pancreas	Pancrea
32	chr11:74860000-74861400	Weak transcription	Adipose Nuclei	Adipose
33	chr11:74860000-74861400	Weak transcription	Fetal Stomach	stomach
34	chr11:74860000-74864000	Weak transcription	Spleen	Spleen

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