Variant report

Variant	rs2851102
Chromosome Location	chr11:74854871-74854872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:74853832-74854924	SK-N-SH	brain:	n/a	chr11:74854175-74854184 chr11:74854387-74854396 chr11:74854385-74854396 chr11:74854386-74854395

No.	Distal block	Cell Line	Cell type
1	chr11:74854818..74856886-chr11:74915338..74916882,2	K562	blood:
2	chr11:74854624..74857110-chr11:74957836..74960008,2	MCF-7	breast:
3	chr11:74854253..74855928-chr11:74871794..74874336,2	MCF-7	breast:
4	chr11:74853112..74855934-chr11:74951491..74955339,4	K562	blood:
5	chr11:74853654..74855652-chr11:74858777..74860606,2	K562	blood:
6	chr11:74854240..74856798-chr11:74915145..74916958,23	MCF-7	breast:
7	chr11:74853916..74856659-chr11:74959240..74960360,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255395	TF binding region
ENSG00000255136	Chromatin interaction
ENSG00000261594	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10899068	0.85[ASN][1000 genomes]
rs11236316	0.86[ASN][1000 genomes]
rs11236317	0.86[ASN][1000 genomes]
rs11236322	0.86[ASN][1000 genomes]
rs11236323	0.86[ASN][1000 genomes]
rs11236325	0.86[ASN][1000 genomes]
rs1893839	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2187435	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712781	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2712787	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712789	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712796	0.80[ASN][1000 genomes]
rs2712805	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712807	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712810	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712819	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712820	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2712821	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851064	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851066	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2851073	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2851074	0.80[ASN][1000 genomes]
rs2851085	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851094	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851096	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3017932	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3018832	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34806493	0.86[ASN][1000 genomes]
rs4146884	0.85[ASN][1000 genomes]
rs7112183	0.86[ASN][1000 genomes]
rs7122948	0.86[ASN][1000 genomes]
rs753171	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949072	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9634028	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2851102	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74851400-74855600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:74851600-74855800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:74852200-74855200	Weak transcription	Fetal Intestine Small	intestine
5	chr11:74852400-74856000	Enhancers	K562	blood
6	chr11:74852400-74858200	Weak transcription	Esophagus	oesophagus
7	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
8	chr11:74853000-74855600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:74853200-74855600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:74853200-74855800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:74853400-74855600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:74853600-74855400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:74853600-74855400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:74853600-74855800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:74853600-74855800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:74853600-74855800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:74853600-74855800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:74853600-74855800	Enhancers	Fetal Muscle Leg	muscle
19	chr11:74853800-74855000	Enhancers	Colonic Mucosa	Colon
20	chr11:74853800-74855400	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:74853800-74855400	Enhancers	Adipose Nuclei	Adipose
22	chr11:74853800-74855400	Enhancers	HMEC	breast
23	chr11:74853800-74855400	Enhancers	HSMMtube	muscle
24	chr11:74853800-74855400	Enhancers	NHLF	lung
25	chr11:74853800-74855600	Enhancers	Primary hematopoietic stem cells	blood
26	chr11:74853800-74855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:74853800-74855600	Enhancers	Fetal Muscle Trunk	muscle
28	chr11:74853800-74855600	Enhancers	Fetal Stomach	stomach
29	chr11:74853800-74855600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:74853800-74855600	Enhancers	GM12878-XiMat	blood
31	chr11:74853800-74855600	Enhancers	HSMM	muscle
32	chr11:74853800-74855600	Enhancers	HUVEC	blood vessel
33	chr11:74853800-74855800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:74853800-74855800	Enhancers	Fetal Thymus	thymus
35	chr11:74853800-74856000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:74853800-74856000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:74853800-74856600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:74853800-74856600	Enhancers	Brain Hippocampus Middle	brain
39	chr11:74853800-74857800	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr11:74853800-74862000	Enhancers	HepG2	liver
42	chr11:74853800-74862200	Enhancers	Placenta	Placenta
43	chr11:74854000-74855400	Enhancers	NH-A	brain
44	chr11:74854000-74855400	Enhancers	NHEK	skin
45	chr11:74854000-74855600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr11:74854000-74855600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:74854000-74855800	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr11:74854000-74856000	Enhancers	Lung	lung
49	chr11:74854000-74856000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links