Variant report

Variant	rs3017932
Chromosome Location	chr11:74812987-74812988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74812003..74816154-chr11:74816263..74818470,5	K562	blood:
2	chr11:74740096..74742646-chr11:74811856..74813625,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10899068	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236316	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236317	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236322	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236323	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236325	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1893839	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2187435	0.80[ASN][1000 genomes]
rs2712781	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712787	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712790	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712792	0.82[ASN][1000 genomes]
rs2712796	0.82[ASN][1000 genomes]
rs2712805	0.81[ASN][1000 genomes]
rs2712807	0.81[ASN][1000 genomes]
rs2851064	0.81[ASN][1000 genomes]
rs2851085	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851094	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851096	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851102	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851108	0.89[ASN][1000 genomes]
rs3018832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34806493	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4146884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112183	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122948	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753171	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933093	0.82[AFR][1000 genomes]
rs949072	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634028	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3017932	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74808000-74814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74811600-74818200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:74811800-74814400	Weak transcription	HSMM	muscle
4	chr11:74811800-74816600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:74811800-74816600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:74812000-74813200	Active TSS	GM12878-XiMat	blood
7	chr11:74812000-74814200	Weak transcription	NHDF-Ad	bronchial
8	chr11:74812000-74814400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:74812000-74814400	Weak transcription	Osteobl	bone
10	chr11:74812000-74814800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:74812000-74816400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:74812200-74813600	Active TSS	A549	lung
13	chr11:74812200-74814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:74812200-74814400	Active TSS	K562	blood
15	chr11:74812400-74816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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