Variant report

Variant	rs2712807
Chromosome Location	chr11:74861881-74861882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74860426..74862138-chr11:74866873..74869626,2	K562	blood:
2	chr11:74860782..74862620-chr11:74866728..74869676,2	MCF-7	breast:
3	chr11:74860499..74862617-chr11:74862814..74864502,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10899068	0.81[ASN][1000 genomes]
rs11236316	0.82[ASN][1000 genomes]
rs11236317	0.82[ASN][1000 genomes]
rs11236322	0.82[ASN][1000 genomes]
rs11236323	0.82[ASN][1000 genomes]
rs11236325	0.82[ASN][1000 genomes]
rs11236359	0.87[ASN][1000 genomes]
rs1893839	0.82[ASN][1000 genomes]
rs2187435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712781	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2712787	0.81[ASN][1000 genomes]
rs2712789	0.81[ASN][1000 genomes]
rs2712805	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712819	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712820	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2712821	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851066	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851073	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851074	0.88[ASN][1000 genomes]
rs2851085	0.81[ASN][1000 genomes]
rs2851094	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2851096	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2851102	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851110	0.84[ASN][1000 genomes]
rs3017932	0.81[ASN][1000 genomes]
rs3018832	0.82[ASN][1000 genomes]
rs34806493	0.82[ASN][1000 genomes]
rs4146884	0.81[ASN][1000 genomes]
rs7112183	0.82[ASN][1000 genomes]
rs7122948	0.82[ASN][1000 genomes]
rs753171	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949072	0.81[ASN][1000 genomes]
rs9634028	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2712807	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74853800-74862000	Enhancers	HepG2	liver
2	chr11:74853800-74862200	Enhancers	Placenta	Placenta
3	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
4	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
5	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
7	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
8	chr11:74859000-74862400	Weak transcription	Liver	Liver
9	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
11	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr11:74859800-74862200	Weak transcription	Lung	lung
15	chr11:74860000-74864000	Weak transcription	Spleen	Spleen
16	chr11:74860400-74862000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr11:74860600-74862000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:74860600-74862200	Enhancers	Colonic Mucosa	Colon
19	chr11:74861000-74862200	Enhancers	Esophagus	oesophagus
20	chr11:74861000-74862200	Enhancers	Stomach Mucosa	stomach
21	chr11:74861000-74862400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:74861200-74862000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:74861200-74862000	Enhancers	Fetal Thymus	thymus
24	chr11:74861200-74862000	Enhancers	Pancreas	Pancrea
25	chr11:74861200-74863600	Enhancers	Gastric	stomach
26	chr11:74861200-74868400	Active TSS	Brain Hippocampus Middle	brain
27	chr11:74861400-74862000	Enhancers	Adipose Nuclei	Adipose
28	chr11:74861400-74862000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr11:74861400-74862400	Enhancers	Fetal Stomach	stomach
30	chr11:74861400-74864000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr11:74861400-74866000	Active TSS	Brain Anterior Caudate	brain
32	chr11:74861600-74864800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr11:74861600-74866200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:74861600-74867200	Active TSS	Brain Cingulate Gyrus	brain
35	chr11:74861800-74862000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr11:74861800-74862200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:74861800-74862200	Enhancers	Right Ventricle	heart
38	chr11:74861800-74863200	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:74861800-74864600	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr11:74861800-74864800	Active TSS	Rectal Smooth Muscle	rectum

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