Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1569346	0.81[CHD][hapmap]
rs2064012	0.86[ASW][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2142296	0.88[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205348	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2205352	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2205353	0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2594159	0.88[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2594167	0.81[AMR][1000 genomes]
rs2594168	0.81[AMR][1000 genomes]
rs2594169	0.81[AMR][1000 genomes]
rs2594170	0.81[AMR][1000 genomes]
rs2594171	0.81[AMR][1000 genomes]
rs2736731	0.81[AMR][1000 genomes]
rs2736736	0.88[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974230	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4974240	0.80[EUR][1000 genomes]
rs6764320	0.83[AMR][1000 genomes]
rs6771383	0.81[CHD][hapmap]
rs6787897	0.81[CHD][hapmap]
rs9754707	0.81[AMR][1000 genomes]
rs9823013	0.84[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9878766	0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60794200-60798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:60796400-60797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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