Variant report

Variant	rs2762331
Chromosome Location	chr6:14987430-14987431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14978310..14980790-chr6:14986814..14989128,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456767	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10456768	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190893	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12193965	0.93[EUR][1000 genomes]
rs12199226	0.90[ASN][1000 genomes]
rs12206325	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530258	0.84[ASN][1000 genomes]
rs1259080	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1259081	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17529181	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2327869	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34333023	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905335	0.87[ASN][1000 genomes]
rs6905750	0.84[ASN][1000 genomes]
rs7771019	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9476703	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14976000-14993000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:14984400-14987600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:14984600-15006600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:14984800-14987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:14984800-14987800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:14984800-14987800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:14984800-14988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:14985000-14987600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:14985000-14992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:14985000-14994600	Weak transcription	Small Intestine	intestine
12	chr6:14985000-14995000	Weak transcription	K562	blood
13	chr6:14985000-15001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:14985000-15003800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:14985200-14987600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:14985200-14987800	Weak transcription	Brain Anterior Caudate	brain
17	chr6:14985200-15006000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:14985600-14988000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:14985600-15003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:14985800-14987600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:14985800-14989600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:14986400-14987600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:14987200-14987600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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