Variant report

Variant	rs7771019
Chromosome Location	chr6:14980461-14980462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456767	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10456768	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190893	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193965	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12199226	0.86[ASN][1000 genomes]
rs12206325	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1259080	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1259081	0.83[ASN][1000 genomes]
rs17529181	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2327869	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2762331	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34333023	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14968600-14986400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14975800-14983800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:14976000-14983800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:14976000-14984000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:14976000-14984200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:14976000-14993000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:14976200-14985800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:14978800-14982000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:14978800-14982000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:14979200-14983800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:14979200-14984000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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