Variant report

Variant	rs34333023
Chromosome Location	chr6:14982492-14982493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456767	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10456768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12190893	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12193965	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12199226	0.87[ASN][1000 genomes]
rs12206325	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1259080	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1259081	0.86[ASN][1000 genomes]
rs17529181	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2327869	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2762331	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905335	0.81[ASN][1000 genomes]
rs7771019	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14968600-14986400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14975800-14983800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:14976000-14983800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:14976000-14984000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:14976000-14984200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:14976000-14993000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:14976200-14985800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:14979200-14983800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:14979200-14984000	Weak transcription	Liver	Liver
11	chr6:14982000-14982800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:14982000-14982800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:14982200-14982600	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:14982200-14982600	Enhancers	K562	blood
15	chr6:14982200-14982800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:14982200-14982800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:14982400-14982600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:14982400-14982800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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