Variant report

Variant	rs2768294
Chromosome Location	chr9:108369374-108369375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115299	0.81[EUR][1000 genomes]
rs10761100	0.87[EUR][1000 genomes]
rs10816278	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10820809	0.87[EUR][1000 genomes]
rs10820810	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10820813	0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs1360089	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1815383	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1960023	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs1987634	0.92[EUR][1000 genomes]
rs2225246	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2427769	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2518106	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2518112	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2518114	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2518116	0.80[JPT][hapmap]
rs2518120	1.00[CEU][hapmap];0.80[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2518123	0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[EUR][1000 genomes]
rs2518124	0.80[ASN][1000 genomes]
rs2518128	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2518131	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2768280	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2768283	0.96[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2768290	0.96[CEU][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2768291	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2768292	0.80[ASN][1000 genomes]
rs2771038	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs2771041	0.96[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2771042	1.00[CEU][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2812303	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs2812308	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2812310	0.92[ASW][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4742947	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4742948	0.91[EUR][1000 genomes]
rs6477447	0.82[EUR][1000 genomes]
rs6477449	0.94[EUR][1000 genomes]
rs7020083	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108321600-108397200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:108328000-108372800	Weak transcription	NHEK	skin
3	chr9:108333200-108400400	Weak transcription	HMEC	breast
4	chr9:108335400-108403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:108338400-108371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:108338400-108403400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:108340200-108372800	Weak transcription	Pancreas	Pancrea
8	chr9:108345600-108400000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:108347000-108399600	Weak transcription	Psoas Muscle	Psoas
10	chr9:108349400-108402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:108350800-108403800	Weak transcription	Fetal Heart	heart
12	chr9:108352600-108382400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:108353600-108385600	Weak transcription	Fetal Kidney	kidney
14	chr9:108354200-108373800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:108354400-108372400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr9:108354400-108372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:108354400-108372800	Weak transcription	Esophagus	oesophagus
18	chr9:108354400-108378200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:108354400-108385800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:108354400-108395800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:108354400-108395800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:108354400-108397200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:108354400-108397400	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:108354400-108400000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:108354400-108403600	Weak transcription	Brain Substantia Nigra	brain
26	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
27	chr9:108354600-108372600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:108354600-108373800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:108354600-108377800	Weak transcription	Spleen	Spleen
30	chr9:108354600-108382400	Weak transcription	Fetal Brain Male	brain
31	chr9:108354600-108389600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:108354600-108395600	Weak transcription	Brain Angular Gyrus	brain
33	chr9:108354600-108397000	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:108354600-108397200	Weak transcription	Aorta	Aorta
35	chr9:108354600-108401600	Weak transcription	GM12878-XiMat	blood
36	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:108354800-108379400	Weak transcription	Fetal Intestine Small	intestine
38	chr9:108354800-108396400	Weak transcription	Fetal Stomach	stomach
39	chr9:108355000-108373800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:108355200-108374200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:108355200-108404200	Weak transcription	Brain Germinal Matrix	brain
42	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:108355800-108374400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:108355800-108396800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:108355800-108397200	Weak transcription	Ovary	ovary
46	chr9:108356000-108403800	Weak transcription	Fetal Thymus	thymus
47	chr9:108356200-108372600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:108358200-108405000	Weak transcription	HUVEC	blood vessel
49	chr9:108359200-108384400	Weak transcription	NH-A	brain
50	chr9:108359800-108397000	Weak transcription	Liver	Liver

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