Variant report

Variant	rs2769377
Chromosome Location	chr10:117328045-117328046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10509994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10749177	0.91[YRI][hapmap]
rs10885744	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12267242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416148	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs17093114	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs17093128	0.84[EUR][1000 genomes]
rs17093132	0.84[EUR][1000 genomes]
rs17093149	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17093214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17093239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17093257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17093273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17093295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17093331	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17093333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17093335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17093399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2182863	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs2245390	0.92[YRI][hapmap]
rs2247151	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2249822	0.91[YRI][hapmap]
rs2250353	1.00[AFR][1000 genomes]
rs2250359	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2250609	1.00[AFR][1000 genomes]
rs2250610	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2250738	1.00[AFR][1000 genomes]
rs2251693	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2254124	0.94[AFR][1000 genomes]
rs2255845	0.94[AFR][1000 genomes]
rs2256064	0.94[AFR][1000 genomes]
rs2263612	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2263613	0.92[YRI][hapmap];1.00[AFR][1000 genomes]
rs2420089	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2769372	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2769373	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2769376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2769380	1.00[YRI][hapmap]
rs2769382	1.00[YRI][hapmap]
rs2769385	0.94[AFR][1000 genomes]
rs2769404	0.94[AFR][1000 genomes]
rs2769410	0.94[AFR][1000 genomes]
rs2769411	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2769414	0.94[AFR][1000 genomes]
rs2784802	1.00[YRI][hapmap]
rs2784805	1.00[YRI][hapmap]
rs2784807	1.00[YRI][hapmap]
rs2804173	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804175	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804180	1.00[YRI][hapmap]
rs2804181	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804182	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804191	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804196	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2804203	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2804218	0.94[AFR][1000 genomes]
rs2804219	1.00[YRI][hapmap]
rs2804222	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2804223	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs2804243	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2804245	0.92[YRI][hapmap]
rs583175	0.91[YRI][hapmap]
rs585348	0.92[YRI][hapmap]
rs665750	0.92[YRI][hapmap]
rs7077948	0.91[YRI][hapmap]
rs7078241	0.92[YRI][hapmap]
rs7081914	1.00[YRI][hapmap]
rs7086126	1.00[YRI][hapmap]
rs7086255	0.92[YRI][hapmap]
rs7097452	0.87[YRI][hapmap]
rs7097962	1.00[YRI][hapmap]
rs7098914	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7098922	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7099169	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs731928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74158208	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911518	1.00[YRI][hapmap]
rs7912262	1.00[YRI][hapmap]
rs7920354	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117327800-117357200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links