Variant report

Variant	rs27856
Chromosome Location	chr5:57728017-57728018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10076546	0.86[ASN][1000 genomes]
rs15009	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1508918	0.86[ASN][1000 genomes]
rs1508919	0.86[ASN][1000 genomes]
rs154489	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs154676	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs154677	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1848510	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2098702	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs246113	0.85[YRI][hapmap]
rs2591860	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3211270	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs32617	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs42741	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700287	0.81[AMR][1000 genomes]
rs695921	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs861293	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs863846	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs27856	GAPT	cis	parietal	SCAN
rs27856	C5orf35	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57727600-57728400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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