Variant report

Variant	rs154676
Chromosome Location	chr5:57737206-57737207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57736186..57738173-chr5:57743943..57745504,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11948619	0.91[ASN][1000 genomes]
rs11950875	0.91[ASN][1000 genomes]
rs15009	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs154489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154677	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848510	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2098702	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2591860	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27856	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3211270	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs32617	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs42741	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700287	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4700290	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55906147	0.89[ASN][1000 genomes]
rs62366398	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs695921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697135	0.93[AFR][1000 genomes]
rs7723549	0.91[ASN][1000 genomes]
rs861293	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs863846	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57734400-57737600	Weak transcription	Pancreas	Pancrea
2	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
3	chr5:57735800-57737400	Enhancers	A549	lung
4	chr5:57735800-57737800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:57736400-57737400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:57736600-57737400	Enhancers	Stomach Mucosa	stomach
7	chr5:57737000-57737800	Enhancers	Fetal Lung	lung
8	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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