The 2.0 version of rSNPBase

Variant report

Variant rs42741
Chromosome Location chr5:57744595-57744596
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:57735200-57751400 Weak transcription Psoas Muscle Psoas
2 chr5:57737000-57747400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr5:57737400-57747000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr5:57737800-57748600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr5:57737800-57749000 Weak transcription Fetal Lung lung
6 chr5:57741200-57744800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr5:57741200-57745200 Weak transcription NHEK skin
8 chr5:57741200-57747000 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr5:57741400-57746000 Weak transcription Fetal Muscle Trunk muscle
10 chr5:57741400-57750200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr5:57741600-57745800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:57741600-57747200 Weak transcription Esophagus oesophagus
13 chr5:57742200-57747800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr5:57742400-57745000 Weak transcription Fetal Muscle Leg muscle
15 chr5:57742600-57746200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr5:57742600-57747400 Weak transcription Fetal Brain Female brain
17 chr5:57742800-57750000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:57742800-57750800 Weak transcription Aorta Aorta
19 chr5:57742800-57751400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr5:57743000-57746000 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr5:57743000-57748800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr5:57743000-57749400 Weak transcription NHDF-Ad bronchial
23 chr5:57743000-57750200 Weak transcription Pancreas Pancrea
24 chr5:57743200-57746000 Weak transcription HMEC breast
25 chr5:57743200-57746200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:57743200-57748400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr5:57743200-57750000 Weak transcription NHLF lung
28 chr5:57743400-57745400 Weak transcription A549 lung
29 chr5:57743600-57746000 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:57743600-57746000 Weak transcription Liver Liver
31 chr5:57743600-57746200 Weak transcription NH-A brain
32 chr5:57743600-57746200 Weak transcription Osteobl bone
33 chr5:57743600-57748000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr5:57743800-57748000 Weak transcription HSMM muscle
35 chr5:57743800-57748400 Weak transcription Fetal Kidney kidney
36 chr5:57743800-57751000 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr5:57744000-57750200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr5:57744400-57749200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015