Variant report

Variant	rs32617
Chromosome Location	chr5:57743302-57743303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11948619	0.94[ASN][1000 genomes]
rs11950875	0.94[ASN][1000 genomes]
rs15009	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs154489	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154676	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154677	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1848510	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2098702	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2591860	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27856	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3211270	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs42741	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700287	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700290	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55906147	0.91[ASN][1000 genomes]
rs62366398	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs695921	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs697135	0.91[AFR][1000 genomes]
rs7723549	0.94[ASN][1000 genomes]
rs861293	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs32617	C5orf35	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
6	chr5:57741200-57744800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:57741200-57745200	Weak transcription	NHEK	skin
8	chr5:57741200-57747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:57741400-57746000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:57741600-57745800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:57741600-57747200	Weak transcription	Esophagus	oesophagus
13	chr5:57742200-57743400	Strong transcription	A549	lung
14	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:57742400-57745000	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:57742600-57746200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:57742600-57747400	Weak transcription	Fetal Brain Female	brain
18	chr5:57742800-57743600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:57742800-57743600	Genic enhancers	NH-A	brain
20	chr5:57742800-57743600	Enhancers	Osteobl	bone
21	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
23	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:57743000-57743600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr5:57743000-57743800	Enhancers	HSMM	muscle
26	chr5:57743000-57746000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
29	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
30	chr5:57743200-57746000	Weak transcription	HMEC	breast
31	chr5:57743200-57746200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:57743200-57748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:57743200-57750000	Weak transcription	NHLF	lung

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