Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPN20B-5	chr10:48642776-48642962	NONHSAT013228

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2790937	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2790939	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2790941	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790942	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790946	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs709624	0.97[ASN][1000 genomes]
rs709625	0.97[ASN][1000 genomes]
rs72792210	0.97[ASN][1000 genomes]
rs72792211	0.97[ASN][1000 genomes]
rs755120	0.97[ASN][1000 genomes]
rs786779	0.97[ASN][1000 genomes]
rs786780	0.97[ASN][1000 genomes]
rs786783	0.97[ASN][1000 genomes]
rs786784	0.97[ASN][1000 genomes]
rs786785	0.81[ASN][1000 genomes]
rs786787	0.97[ASN][1000 genomes]
rs786793	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786806	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786808	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786822	1.00[ASN][1000 genomes]
rs813092	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48625800-48649400	Weak transcription	Thymus	Thymus
2	chr10:48640800-48646400	Weak transcription	Right Atrium	heart
3	chr10:48641400-48643200	Enhancers	Fetal Lung	lung

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