Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48631773..48635312-chr10:48638153..48641553,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2790937	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2790938	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2790939	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2790941	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2790942	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2790944	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2790946	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs709624	0.93[ASN][1000 genomes]
rs709625	0.93[ASN][1000 genomes]
rs72792210	0.93[ASN][1000 genomes]
rs72792211	0.93[ASN][1000 genomes]
rs755120	0.94[ASN][1000 genomes]
rs786779	0.93[ASN][1000 genomes]
rs786780	0.93[ASN][1000 genomes]
rs786783	0.93[ASN][1000 genomes]
rs786784	0.93[ASN][1000 genomes]
rs786787	0.93[ASN][1000 genomes]
rs786806	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786808	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786822	0.97[ASN][1000 genomes]
rs813092	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48625800-48649400	Weak transcription	Thymus	Thymus
2	chr10:48627800-48636400	Enhancers	Fetal Lung	lung
3	chr10:48629600-48633800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:48629600-48633800	Weak transcription	Aorta	Aorta
5	chr10:48630200-48634200	Weak transcription	Fetal Stomach	stomach
6	chr10:48631400-48635000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:48631600-48634600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:48632000-48634000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:48632000-48635600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:48632200-48634000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:48632600-48633800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:48632600-48633800	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:48632800-48634000	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:48633000-48634800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:48633400-48634000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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