Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2790937	0.94[ASN][1000 genomes]
rs2790938	0.97[ASN][1000 genomes]
rs2790939	0.83[ASN][1000 genomes]
rs2790941	0.97[ASN][1000 genomes]
rs2790942	0.97[ASN][1000 genomes]
rs2790944	0.97[ASN][1000 genomes]
rs2790946	0.97[ASN][1000 genomes]
rs709624	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs709625	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72792210	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72792211	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs786779	0.94[ASN][1000 genomes]
rs786780	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs786783	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs786784	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs786785	0.80[EUR][1000 genomes]
rs786787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs786793	0.94[ASN][1000 genomes]
rs786806	0.97[ASN][1000 genomes]
rs786808	0.97[ASN][1000 genomes]
rs786822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs813092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48625800-48649400	Weak transcription	Thymus	Thymus
2	chr10:48646200-48649600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:48647000-48649800	Weak transcription	Fetal Thymus	thymus
4	chr10:48647000-48650600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:48647200-48647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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