Variant report
| Variant | rs813092 |
|---|---|
| Chromosome Location | chr10:48653114-48653115 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs2790937 | 0.94[ASN][1000 genomes] |
| rs2790938 | 0.97[ASN][1000 genomes] |
| rs2790939 | 0.83[ASN][1000 genomes] |
| rs2790941 | 0.97[ASN][1000 genomes] |
| rs2790942 | 0.97[ASN][1000 genomes] |
| rs2790944 | 0.97[ASN][1000 genomes] |
| rs2790946 | 0.97[ASN][1000 genomes] |
| rs709624 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs709625 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72792210 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72792211 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs755120 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs786779 | 1.00[ASN][1000 genomes] |
| rs786780 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs786783 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs786784 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs786785 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs786787 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs786793 | 0.93[ASN][1000 genomes] |
| rs786806 | 0.97[ASN][1000 genomes] |
| rs786808 | 0.97[ASN][1000 genomes] |
| rs786822 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758218 | chr10:48593396-49299273 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv2759748 | chr10:48593396-49299273 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:48651200-48653600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
