Variant report
| Variant | rs2791328 |
|---|---|
| Chromosome Location | chr10:25497995-25497996 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1339998 | 0.94[EUR][1000 genomes] |
| rs16925458 | 0.82[ASN][1000 genomes] |
| rs16925472 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1856701 | 0.89[EUR][1000 genomes] |
| rs2182353 | 0.95[EUR][1000 genomes] |
| rs2248279 | 0.95[EUR][1000 genomes] |
| rs2765702 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2765703 | 0.95[EUR][1000 genomes] |
| rs2765704 | 0.94[EUR][1000 genomes] |
| rs2765705 | 0.95[EUR][1000 genomes] |
| rs2765706 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2765708 | 0.95[EUR][1000 genomes] |
| rs2765709 | 0.95[EUR][1000 genomes] |
| rs2765710 | 0.94[EUR][1000 genomes] |
| rs2765711 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2765712 | 0.94[EUR][1000 genomes] |
| rs2791324 | 0.91[EUR][1000 genomes] |
| rs2807230 | 0.94[EUR][1000 genomes] |
| rs2807231 | 0.94[EUR][1000 genomes] |
| rs2807232 | 0.92[EUR][1000 genomes] |
| rs2807233 | 0.94[EUR][1000 genomes] |
| rs2807234 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2807235 | 0.94[EUR][1000 genomes] |
| rs2807236 | 0.95[EUR][1000 genomes] |
| rs2807237 | 0.95[EUR][1000 genomes] |
| rs2807238 | 0.95[EUR][1000 genomes] |
| rs2807240 | 0.91[EUR][1000 genomes] |
| rs2807241 | 0.95[EUR][1000 genomes] |
| rs7081232 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894970 | chr10:25385858-25522280 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv894971 | chr10:25403234-25522280 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25496600-25498000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
