Variant report

Variant	rs2807238
Chromosome Location	chr10:25508037-25508038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10508689	0.84[CHB][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs10828768	0.85[JPT][hapmap]
rs11014447	0.87[ASN][1000 genomes]
rs11014452	0.82[JPT][hapmap]
rs11014456	0.86[JPT][hapmap]
rs12263037	0.86[JPT][hapmap]
rs12358959	0.87[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs1334058	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1339998	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413394	0.86[JPT][hapmap]
rs1416995	0.86[JPT][hapmap]
rs16925456	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs16925458	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs16925470	0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16925472	0.85[JPT][hapmap]
rs16925478	0.82[JPT][hapmap]
rs16925515	0.86[JPT][hapmap]
rs1856701	0.93[EUR][1000 genomes]
rs1856703	0.83[ASN][1000 genomes]
rs1926055	0.82[JPT][hapmap]
rs1931293	0.82[JPT][hapmap]
rs2182353	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2248279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765701	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2765702	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2765703	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765706	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2765707	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2765708	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765710	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765711	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2765712	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2791324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2791327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2791328	0.95[EUR][1000 genomes]
rs2807230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807234	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807237	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2807240	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2807241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749015	0.86[JPT][hapmap]
rs7081232	0.82[CEU][hapmap]
rs7086304	0.82[CEU][hapmap]
rs7902135	0.86[JPT][hapmap]
rs915027	0.86[JPT][hapmap]
rs915028	0.86[JPT][hapmap]
rs959334	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25499400-25508200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25505400-25508200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25505400-25515600	Weak transcription	Brain Substantia Nigra	brain
4	chr10:25507400-25508600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:25507800-25509600	Enhancers	Cortex derived primary cultured neurospheres	brain

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