Variant report

Variant	rs16925478
Chromosome Location	chr10:25523366-25523367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10508689	0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828768	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11014447	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11014448	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014449	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014450	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014451	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014452	1.00[ASW][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014453	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014456	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs11014474	0.82[JPT][hapmap];1.00[TSI][hapmap]
rs11014478	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11014481	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12263037	0.84[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap]
rs12358959	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs1334058	0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1339999	0.82[JPT][hapmap]
rs1413394	0.84[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs1416995	0.84[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs16925470	0.82[ASW][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16925472	0.92[EUR][1000 genomes]
rs16925515	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1926055	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931293	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182353	0.82[JPT][hapmap]
rs2248279	0.82[JPT][hapmap]
rs2765703	0.82[JPT][hapmap]
rs2765704	0.82[JPT][hapmap]
rs2765705	0.82[JPT][hapmap]
rs2765707	0.82[JPT][hapmap]
rs2765709	0.82[JPT][hapmap]
rs2765710	0.88[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap]
rs2791324	0.82[JPT][hapmap]
rs2807230	0.82[JPT][hapmap]
rs2807231	0.92[ASW][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs2807232	0.80[JPT][hapmap]
rs2807233	0.82[JPT][hapmap]
rs2807235	0.82[JPT][hapmap]
rs2807236	0.82[JPT][hapmap]
rs2807237	0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap]
rs2807238	0.82[JPT][hapmap]
rs2807241	0.88[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap]
rs4747516	0.82[JPT][hapmap]
rs4749015	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7902135	0.84[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap]
rs915027	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs915028	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs959334	0.84[CHB][hapmap];0.95[JPT][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25522400-25523400	Weak transcription	Brain Germinal Matrix	brain
2	chr10:25522600-25526600	Weak transcription	Brain Anterior Caudate	brain

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