Variant report

Variant	rs16925472
Chromosome Location	chr10:25521151-25521152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25397970..25400027-chr10:25519164..25521863,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508689	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs11014435	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs11014447	0.98[EUR][1000 genomes]
rs11014448	0.89[EUR][1000 genomes]
rs11014452	1.00[CEU][hapmap]
rs11014453	1.00[CEU][hapmap]
rs11014456	1.00[CEU][hapmap]
rs11014474	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs11014481	1.00[CEU][hapmap]
rs12358959	1.00[CEU][hapmap]
rs1334058	0.82[JPT][hapmap];0.98[EUR][1000 genomes]
rs1339996	0.81[JPT][hapmap]
rs1339999	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs16925456	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs16925458	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs16925470	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs16925478	0.92[EUR][1000 genomes]
rs16925515	1.00[CEU][hapmap]
rs1926055	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1931293	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2182353	0.81[JPT][hapmap]
rs2248279	0.86[JPT][hapmap]
rs2765699	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2765701	0.81[JPT][hapmap]
rs2765702	0.85[ASN][1000 genomes]
rs2765703	0.87[JPT][hapmap]
rs2765704	0.87[JPT][hapmap]
rs2765705	0.87[JPT][hapmap]
rs2765706	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2765707	0.87[JPT][hapmap]
rs2765709	0.86[JPT][hapmap]
rs2765710	0.85[JPT][hapmap]
rs2765711	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2791324	0.87[JPT][hapmap]
rs2791326	0.81[JPT][hapmap]
rs2791327	0.81[JPT][hapmap]
rs2791328	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2807230	0.86[JPT][hapmap]
rs2807231	0.85[JPT][hapmap]
rs2807232	0.90[JPT][hapmap]
rs2807233	0.87[JPT][hapmap]
rs2807234	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2807235	0.87[JPT][hapmap]
rs2807236	0.86[JPT][hapmap]
rs2807237	0.85[JPT][hapmap]
rs2807238	0.85[JPT][hapmap]
rs2807241	0.85[JPT][hapmap]
rs4747516	0.85[JPT][hapmap]
rs4749015	1.00[CEU][hapmap]
rs7081232	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7923252	1.00[CEU][hapmap]
rs915028	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25516400-25521200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:25520600-25521400	Weak transcription	Fetal Brain Male	brain
3	chr10:25521000-25522200	Enhancers	Fetal Brain Female	brain
4	chr10:25521000-25522400	Enhancers	Cortex derived primary cultured neurospheres	brain

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