Variant report

Variant	rs1339996
Chromosome Location	chr10:25488059-25488060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828763	0.86[JPT][hapmap]
rs11014431	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11014435	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs11818773	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12411980	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs12411993	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs16925456	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs16925458	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16925472	0.81[JPT][hapmap]
rs2765697	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2765699	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2765706	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs2765711	0.80[CHB][hapmap]
rs2807234	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7081232	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7086304	0.82[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760160	chr10:25473747-25496153	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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