Variant report

Variant	rs2765697
Chromosome Location	chr10:25487506-25487507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENKUR-5	chr10:25487007-25488838	refGeneNc_2728_NR_027333

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10828763	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs11014431	0.87[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs11014435	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11818773	0.93[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411980	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12411993	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1339996	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs16925456	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs16925458	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs2765699	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs2765703	0.96[YRI][hapmap]
rs2765706	0.88[CHB][hapmap]
rs2765707	0.96[YRI][hapmap]
rs2765710	0.81[ASW][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.93[YRI][hapmap]
rs2765711	0.81[CHB][hapmap]
rs2807234	0.87[CHB][hapmap]
rs2807237	0.81[ASW][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap]
rs7081232	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7086304	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap]
rs7920241	0.86[AMR][1000 genomes]
rs7921132	0.88[AMR][1000 genomes]
rs7923288	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760160	chr10:25473747-25496153	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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