Variant report
| Variant | rs7920241 |
|---|---|
| Chromosome Location | chr10:25449748-25449749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR158-1 | chr10:25448580-25450165 | ENSG00000231422.2 |
| 2 | lnc-GPR158-1 | chr10:25448580-25450162 | NONHSAT011799 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10828760 | 0.90[ASN][1000 genomes] |
| rs10828763 | 0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11014431 | 0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11014435 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11818773 | 0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs12411980 | 0.87[CEU][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap] |
| rs12411993 | 0.82[CEU][hapmap] |
| rs1339996 | 0.85[JPT][hapmap] |
| rs16925456 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs16925458 | 0.83[CHB][hapmap];0.90[JPT][hapmap] |
| rs2765697 | 1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes] |
| rs2765699 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap] |
| rs2765710 | 0.81[MEX][hapmap] |
| rs7081232 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7921132 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7923288 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894970 | chr10:25385858-25522280 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv894971 | chr10:25403234-25522280 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
