Variant report

Variant	rs11014435
Chromosome Location	chr10:25470573-25470574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25464792..25468231-chr10:25470120..25472618,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233642	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10828763	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11014431	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014436	0.86[YRI][hapmap]
rs11014474	0.80[JPT][hapmap]
rs11818773	0.87[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12411980	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs12411993	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1339996	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1339999	0.82[JPT][hapmap]
rs16925456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16925458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16925472	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2765697	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2765699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2765706	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2765711	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2807234	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4747516	0.80[JPT][hapmap]
rs7081232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7086304	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7918295	0.83[YRI][hapmap]
rs7920241	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7921132	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7923288	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25466800-25471800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25467600-25475200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:25468200-25472000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25470200-25472200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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