Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr10:25459742-25459967	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25453803..25455950-chr10:25458060..25461045,2	MCF-7	breast:

Variant related genes	Relation type
GPR158	TF binding region

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828760	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014435	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014474	0.83[MEX][hapmap]
rs11818773	0.81[JPT][hapmap]
rs12411980	0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs12411993	0.81[CHB][hapmap]
rs1339996	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs16925456	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs16925458	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2182353	0.85[CEU][hapmap]
rs2765697	0.87[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs2765699	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2765703	0.85[CEU][hapmap]
rs2765706	0.82[CHB][hapmap]
rs2765707	0.85[CEU][hapmap]
rs2765710	0.85[CEU][hapmap]
rs2765711	0.94[MEX][hapmap]
rs2807234	0.81[CHB][hapmap]
rs2807237	0.85[CEU][hapmap]
rs7081232	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7086304	0.85[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs7090132	0.94[YRI][hapmap]
rs7906676	0.94[YRI][hapmap]
rs7920241	0.97[ASN][1000 genomes]
rs7921132	0.92[ASN][1000 genomes]
rs915029	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25459200-25459800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr10:25459200-25459800	Enhancers	HUES48 Cell Line	embryonic stem cell

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