Variant report

Variant	rs915029
Chromosome Location	chr10:25565057-25565058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11014431	0.83[MEX][hapmap]
rs11014474	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11014476	0.96[ASN][1000 genomes]
rs11014478	0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014481	0.81[JPT][hapmap]
rs12263037	1.00[TSI][hapmap]
rs1339999	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1413394	1.00[TSI][hapmap]
rs16925515	0.82[AMR][1000 genomes]
rs2765711	0.88[MEX][hapmap]
rs4747516	0.94[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs7086304	0.88[MEX][hapmap]
rs7902135	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7923252	1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915027	0.81[EUR][1000 genomes]
rs9988748	1.00[CHB][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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