Variant report

Variant	rs9988748
Chromosome Location	chr10:25549087-25549088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10828767	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014474	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014476	1.00[ASN][1000 genomes]
rs11014478	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1339999	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs16925515	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4747516	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs7923252	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs915027	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs915029	1.00[CHB][hapmap]
rs959334	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3326979	chr10:25535995-25555648	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25548200-25549400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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