Variant report

Variant	rs11014474
Chromosome Location	chr10:25547949-25547950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25546638..25548585-chr10:25550182..25553102,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10508689	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10828767	0.89[EUR][1000 genomes]
rs10828768	0.85[JPT][hapmap]
rs11014431	0.83[MEX][hapmap]
rs11014435	0.80[JPT][hapmap]
rs11014452	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs11014453	1.00[CEU][hapmap]
rs11014456	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11014476	0.98[ASN][1000 genomes]
rs11014478	0.95[EUR][1000 genomes]
rs11014481	1.00[CEU][hapmap]
rs12263037	0.86[JPT][hapmap]
rs12358959	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs1339999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413394	0.86[JPT][hapmap]
rs1416995	0.86[JPT][hapmap];0.90[TSI][hapmap]
rs16925456	0.80[JPT][hapmap]
rs16925458	0.80[JPT][hapmap]
rs16925470	1.00[CEU][hapmap]
rs16925472	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs16925478	0.82[JPT][hapmap];1.00[TSI][hapmap]
rs16925515	1.00[CEU][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs1926055	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs1931293	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2765699	0.80[JPT][hapmap]
rs2765706	0.85[JPT][hapmap]
rs2765711	1.00[ASW][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap]
rs2807234	0.85[JPT][hapmap]
rs4747516	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs4749015	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7081232	0.80[JPT][hapmap]
rs7086304	0.88[MEX][hapmap]
rs7902135	0.86[JPT][hapmap]
rs7923252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs915027	0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs915028	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs915029	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap]
rs959334	0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs9988748	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3326979	chr10:25535995-25555648	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25547800-25548000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links