Variant report

Variant	rs1413394
Chromosome Location	chr10:25574380-25574381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10508689	0.91[JPT][hapmap]
rs10828767	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10828768	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11014452	1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs11014453	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11014456	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014474	0.86[JPT][hapmap]
rs11014478	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014481	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12263037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs12358959	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1334058	0.91[JPT][hapmap]
rs1339999	0.86[JPT][hapmap]
rs1416995	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap]
rs16925470	0.91[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]
rs16925478	0.84[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs16925515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1926055	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1931293	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2182353	0.86[JPT][hapmap]
rs2248279	0.86[JPT][hapmap]
rs2765701	0.82[JPT][hapmap]
rs2765703	0.86[JPT][hapmap]
rs2765704	0.86[JPT][hapmap]
rs2765705	0.86[JPT][hapmap]
rs2765707	0.86[JPT][hapmap]
rs2765709	0.86[JPT][hapmap]
rs2765710	0.83[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap]
rs2791324	0.86[JPT][hapmap]
rs2791326	0.82[JPT][hapmap]
rs2791327	0.82[JPT][hapmap]
rs2807230	0.86[JPT][hapmap]
rs2807231	0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap]
rs2807232	0.84[JPT][hapmap]
rs2807233	0.86[JPT][hapmap]
rs2807235	0.86[JPT][hapmap]
rs2807236	0.86[JPT][hapmap]
rs2807237	0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap]
rs2807238	0.86[JPT][hapmap]
rs2807241	0.83[GIH][hapmap];0.86[JPT][hapmap]
rs4747516	0.86[JPT][hapmap]
rs4749015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7902135	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs7923252	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs915027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs915028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs915029	1.00[TSI][hapmap]
rs959334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9988748	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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