Variant report

Variant	rs959334
Chromosome Location	chr10:25543157-25543158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10508689	0.91[JPT][hapmap]
rs10828767	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828768	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11014452	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11014453	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11014456	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014474	0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs11014478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014481	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs12263037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12358959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334058	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs1339999	0.87[JPT][hapmap]
rs1413394	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1416995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16925470	0.86[JPT][hapmap]
rs16925478	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16925515	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926055	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1931293	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2182353	0.83[JPT][hapmap]
rs2248279	0.87[JPT][hapmap]
rs2765701	0.83[JPT][hapmap]
rs2765703	0.87[JPT][hapmap]
rs2765704	0.87[JPT][hapmap]
rs2765705	0.87[JPT][hapmap]
rs2765707	0.87[JPT][hapmap]
rs2765709	0.87[JPT][hapmap]
rs2765710	0.86[JPT][hapmap]
rs2791324	0.87[JPT][hapmap]
rs2791326	0.83[JPT][hapmap]
rs2791327	0.83[JPT][hapmap]
rs2807230	0.87[JPT][hapmap]
rs2807231	0.86[JPT][hapmap]
rs2807232	0.85[JPT][hapmap]
rs2807233	0.87[JPT][hapmap]
rs2807235	0.87[JPT][hapmap]
rs2807236	0.87[JPT][hapmap]
rs2807237	0.86[JPT][hapmap]
rs2807238	0.86[JPT][hapmap]
rs2807241	0.86[JPT][hapmap]
rs4747516	0.86[JPT][hapmap]
rs4749015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7902135	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7923252	0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs915027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs915028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9988748	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3326979	chr10:25535995-25555648	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25542400-25545200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25542800-25543800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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